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Publications

Functional linkage of gene fusions to cancer cell fitness assessed by pharmacological and CRISPR-Cas9 screening

Picco G. et al, (2019), Nature Communications, 10

Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation

Brinkman AB. et al, (2019), Nature Communications, 10

Integration of transcriptional and mutational data simplifies the stratification of peripheral T-cell lymphoma

Maura F. et al, (2019), American Journal of Hematology, 94, 628 - 634

The circular RNome of primary breast cancer

Smid M. et al, (2019), Genome Research, 29, 356 - 366

Correction to: Landscape of somatic mutations in 560 breast cancer whole-genome sequences (Nature, (2016), 534, 7605, (47-54), 10.1038/nature17676)

Nik-Zainal S. et al, (2019), Nature, 566

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups

Bolli N. et al, (2018), Leukemia, 1 - 29

Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups

Bolli N. et al, (2018), Leukemia, 32, 2604 - 2616

Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting

Iorio F. et al, (2018), BMC Genomics, 19

The driver landscape of sporadic chordoma

Tarpey PS. et al, (2017), Nature Communications, 8

Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration

Smid M. et al, (2016), Nature Communications, 7

Genomic classification and prognosis in acute myeloid leukemia

Papaemmanuil E. et al, (2016), New England Journal of Medicine, 374, 2209 - 2221

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

Nik-Zainal S. et al, (2016), Nature, 534, 47 - 54

The topography of mutational processes in breast cancer genomes

Morganella S. et al, (2016), Nature Communications, 7

cgpCaVEManWrapper: Simple execution of caveman in order to detect somatic single nucleotide variants in NGS data

Jones D. et al, (2016), Current Protocols in Bioinformatics, 2016, 15.10.1 - 15.10.18

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing

Alioto TS. et al, (2015), Nature Communications, 6

Erratum: The Life History of 21 Breast Cancers (Cell 149 (994-1007))

Nik-Zainal S. et al, (2015), Cell, 162

Subclonal diversification of primary breast cancer revealed by multiregion sequencing

Yates LR. et al, (2015), Nature Medicine, 21, 751 - 759

Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

Cooper CS. et al, (2015), Nature Genetics, 47, 367 - 372

cgpPindel: Identifying Somatically Acquired Insertion and Deletion Events from Paired End Sequencing

Raine KM. et al, (2015), Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], 52, 15.7.1 - 15.7.12

Erratum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue (Nature Genetics (2015) 47 (367-372))

Cooper CS. et al, (2015), Nature Genetics, 47

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